as.PseudotimeOrdering | Conversion to PseudotimeOrdering |
as.PseudotimeOrdering-method | Conversion to PseudotimeOrdering |
as.SlingshotDataSet | Conversion to SlingshotDataSet |
as.SlingshotDataSet-method | Conversion to SlingshotDataSet |
embedCurves | Embed trajectory in new space |
embedCurves-method | Embed trajectory in new space |
getCurves | Construct Simultaneous Principal Curves |
getCurves-method | Construct Simultaneous Principal Curves |
getLineages | Infer Lineage Structure from Clustered Samples |
getLineages-method | Infer Lineage Structure from Clustered Samples |
lines.SlingshotDataSet | Plot Slingshot output |
newSlingshotDataSet | Initialize an object of class 'SlingshotDataSet' |
newSlingshotDataSet-method | Initialize an object of class 'SlingshotDataSet' |
pairs-SlingshotDataSet | Pairs plot of Slingshot output |
pairs.SlingshotDataSet | Pairs plot of Slingshot output |
plot-method | Plot Slingshot output |
plot-SlingshotDataSet | Plot Slingshot output |
plot.SlingshotDataSet | Plot Slingshot output |
plot3d-SlingshotDataSet | Plot Slingshot output in 3D |
plot3d.SlingshotDataSet | Plot Slingshot output in 3D |
predict-method | Predict from a Slingshot model |
reducedDim-method | Class 'SlingshotDataSet' |
reducedDims-method | Class 'SlingshotDataSet' |
show-method | Class 'SlingshotDataSet' |
slingAvgPseudotime | Get Slingshot pseudotime values |
slingAvgPseudotime-method | Get Slingshot pseudotime values |
slingBranchGraph | Construct graph of slingshot branch labels |
slingBranchGraph-method | Construct graph of slingshot branch labels |
slingBranchID | Get slingshot branch labels |
slingBranchID-method | Get slingshot branch labels |
slingClusterLabels | Extract cluster labels used by Slingshot |
slingClusterLabels-method | Extract cluster labels used by Slingshot |
slingCurves | Extract simultaneous principal curves |
slingCurves-method | Extract simultaneous principal curves |
slingCurveWeights | Get Slingshot pseudotime values |
slingCurveWeights-method | Get Slingshot pseudotime values |
slingLineages | Extract the Slingshot lineages |
slingLineages-method | Extract the Slingshot lineages |
slingMST | Extract Slingshot minimum spanning tree |
slingMST-method | Extract Slingshot minimum spanning tree |
slingParams | Methods for parameters used by Slingshot |
slingParams-method | Methods for parameters used by Slingshot |
slingPseudotime | Get Slingshot pseudotime values |
slingPseudotime-method | Get Slingshot pseudotime values |
slingReducedDim | Extract dimensionality reduction used by Slingshot |
slingReducedDim-method | Extract dimensionality reduction used by Slingshot |
slingshot | Perform trajectory inference with Slingshot |
slingshot-method | Perform trajectory inference with Slingshot |
SlingshotDataSet | Extract Slingshot output |
SlingshotDataSet-class | Class 'SlingshotDataSet' |
SlingshotDataSet-method | Extract Slingshot output |
slingshotExample | Bifurcating lineages data |