data set for R package seq2pathway


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Documentation for package ‘seq2pathway.data’ version 1.40.0

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dat_gene2path_chip demo result of gene2pathway function from chip seq data
dat_gene2path_RNA demo result of gene2pathway function from RNA seq data
dat_seq2pathway_GOterms demo result of seq2pathway function from chip seq data
dat_seq2pathway_Msig demo result of seq2pathway function from chip seq data
Des_BP_list Description of GO term BP
Des_CC_list Description of GO term CC
Des_MF_list Description of GO term MF
gencode_coding Coding gene list in GENCODE 20.
gene_description demo data of adding gene description
GO_BP_list Gene symbol list of GO term BP
GO_CC_list Gene symbol list of GO term CC
GO_GENCODE_df_hg_v19 intersection genes of GO terms and GENCODE 19
GO_GENCODE_df_hg_v36 intersection genes of GO terms and GENCODE 36
GO_GENCODE_df_mm_vM1 intersection genes of GO terms and GENCODE vM1
GO_GENCODE_df_mm_vM25 intersection genes of GO terms and GENCODE vM25
GO_MF_list Gene symbol list of GO term MF
MsigDB_C5 MsigDB data set
Msig_GENCODE_df_hg_v19 intersection genes of MSigDB collection and GENCODE 19
Msig_GENCODE_df_hg_v36 intersection genes of MSigDB collection and GENCODE 36
Msig_GENCODE_df_mm_vM1 intersection genes of MSigDB collection and GENCODE vM1
Msig_GENCODE_df_mm_vM25 intersection genes of MSigDB collection and GENCODE vM25