emdomics-package |
Earth Mover's Distance algorithm for differential analysis of genomics data. |
calculate_cvm |
Cramer von Mises for differential analysis of genomics data |
calculate_cvm_gene |
Calculate CVM score for a single gene |
calculate_emd |
Earth Mover's Distance for differential analysis of genomics data |
calculate_emd_gene |
Calculate EMD score for a single gene |
calculate_ks |
Calculate the Komolgorov-Smirnov test statistic and q-values for differential gene expression analysis. |
calculate_ks_gene |
Calculate KS score for a single gene |
CVMomics |
Create an CVMomics object |
EMDomics |
Create an EMDomics object |
KSomics |
Create an KSomics object |
plot_cvmnull |
Plot null distribution of permuted cvm scores vs. calculated cvm scores. |
plot_cvmperms |
Plot histogram of CVM scores calculated via random permutation. |
plot_cvm_density |
Plot distributions and CVM score for a gene. |
plot_emdnull |
Plot null distribution of permuted EMD scores vs. calculated EMD scores. |
plot_emdperms |
Plot histogram of EMD scores calculated via random permutation. |
plot_emd_density |
Plot distributions and EMD score for a gene. |
plot_ksnull |
Plot null distribution of permuted ks scores vs. calculated ks scores. |
plot_ksperms |
Plot histogram of KS scores calculated via random permutation. |
plot_ks_density |
Plot distributions and KS score for a gene. |